Hafumi Nishi : rechercher sur Z-Library

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1

Caught in self-interaction: evolutionary and functional mechanisms of protein homooligomerization

Hashimoto, Kosuke, Nishi, Hafumi, Bryant, Stephen, Panchenko, Anna R

Journal:

Physical Biology

Année:

2011

Langue:

english

Fichier:

PDF, 733 KB

english, 2011

2

Amino acid substitutions at protein–protein interfaces that modulate the oligomeric state

Hafumi Nishi, Motonori Ota

Journal:

Proteins: Structure, Function, and Bioinformatics

Année:

2010

Langue:

english

Fichier:

PDF, 677 KB

english, 2010

3

Cover and spacer insertions: Small nonhydrophobic accessories that assist protein oligomerization

Hafumi Nishi, Ryotaro Koike, Motonori Ota

Journal:

Proteins: Structure, Function, and Bioinformatics

Année:

2011

Langue:

english

Fichier:

PDF, 983 KB

english, 2011

4

Phosphorylation in Protein-Protein Binding: Effect on Stability and Function

Hafumi Nishi, Kosuke Hashimoto, Anna R. Panchenko

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 638 KB

english, 2011

5

Regulation of protein–protein binding by coupling between phosphorylation and intrinsic disorder: analysis of human protein complexes

Nishi, Hafumi, Fong, Jessica H., Chang, Christiana, Teichmann, Sarah A., Panchenko, Anna R.

Journal:

Molecular BioSystems

Année:

2013

Langue:

english

Fichier:

PDF, 1.55 MB

english, 2013

6

[Progress in Molecular Biology and Translational Science] Oligomerization in Health and Disease Volume 117 || Evolutionary, Physicochemical, and Functional Mechanisms of Protein Homooligomerization

Année:

2013

Langue:

english

Fichier:

PDF, 1.05 MB

english, 2013

7

Molecular Mechanisms of Disease-Causing Missense Mutations

Stefl, Shannon, Nishi, Hafumi, Petukh, Marharyta, Panchenko, Anna R., Alexov, Emil

Journal:

Journal of Molecular Biology

Année:

2013

Langue:

english

Fichier:

PDF, 999 KB

english, 2013

8

Crosstalk between Signaling Pathways Provided by Single and Multiple Protein Phosphorylation Sites

Nishi, Hafumi, Demir, Emek, Panchenko, Anna R.

Journal:

Journal of Molecular Biology

Année:

2015

Langue:

english

Fichier:

PDF, 628 KB

english, 2015

9

Physicochemical mechanisms of protein regulation by phosphorylation

Nishi, Hafumi, Shaytan, Alexey, Panchenko, Anna R.

Journal:

Frontiers in Genetics

Année:

2014

Langue:

english

Fichier:

PDF, 1.93 MB

english, 2014

10

Distribution of single-nucleotide variants on protein-protein interaction sites and its relationship with minor allele frequency

Nishi, Hafumi, Nakata, Junichi, Kinoshita, Kengo

Journal:

Protein Science

Année:

2016

Langue:

english

Fichier:

PDF, 493 KB

english, 2016

11

H255Y and K508R missense mutations in tumour suppressor folliculin (FLCN) promote kidney cell proliferation

Hasumi, Hisashi, Hasumi, Yukiko, Baba, Masaya, Nishi, Hafumi, Furuya, Mitsuko, Vocke, Cathy D., Lang, Martin, Irie, Nobuko, Esumi, Chiharu, Merino, Maria J., Kawahara, Takashi, Isono, Yasuhiro, Makiya

Journal:

Human Molecular Genetics

Année:

2016

Langue:

english

Fichier:

PDF, 1.35 MB

english, 2016

12

Identification of the sequence determinants of proteinN-terminal acetylation through a decision tree approach

Yamada, Kazunori D., Omori, Satoshi, Nishi, Hafumi, Miyagi, Masaru

Journal:

BMC Bioinformatics

Année:

2017

Langue:

english

Fichier:

PDF, 498 KB

english, 2017

13

New tools and functions in Data-out activities at Protein Data Bank Japan (PDBj)

Kinjo, Akira R., Bekker, Gert-Jan, Wako, Hiroshi, Endo, Shigeru, Tsuchiya, Yuko, Sato, Hiromu, Nishi, Hafumi, Kinoshita, Kengo, Suzuki, Hirofumi, Kawabata, Takeshi, Yokochi, Masashi, Iwata, Takeshi, K

Journal:

Protein Science

Année:

2017

Langue:

english

Fichier:

PDF, 1.75 MB

english, 2017

14

2TP4-02 Insertion and/or deletion regions on protein-protein interface to alter oligomeric states.(The 47th Annual Meeting of the Biophysical Society of Japan)

Nishi, Hafumi, Ota, Motonori

Journal:

Seibutsu Butsuri

Année:

2009

Langue:

english

Fichier:

PDF, 454 KB

english, 2009

15

2P-237 Insertion and/or deletion regions on protein-protein interface to alter oligomeric states(Bioinformatics:Structural genomics,The 47th Annual Meeting of the Biophysical Society of Japan)

Nishi, Hafumi, Ota, Motonori

Journal:

Seibutsu Butsuri

Année:

2009

Langue:

english

Fichier:

PDF, 210 KB

english, 2009

16

2P434 Emergence of protein-protein interfaces : Insight from amino acid substitutions(48. Bioinformatics, genomics and proteomics (II),Poster Session,Abstract,Meeting Program of EABS & BSJ 2006)

Nishi, Hafumi, Ota, Motonori

Journal:

Seibutsu Butsuri

Année:

2006

Langue:

english

Fichier:

PDF, 157 KB

english, 2006

17

1P251 Alternation of oligomeric states within protein families(Bioinformatics-structural, functional, and comparative genomics,Oral Presentations)

Nishi, Hafumi, Ota, Motonori

Journal:

Seibutsu Butsuri

Année:

2007

Langue:

english

Fichier:

PDF, 224 KB

english, 2007

18

1P271 Crosstalk between signaling pathways revealed by database analysis of human phosphorylation sites(22B. Bioinformatics: Functional genomics,Poster)

Nishi, Hafumi, Demir, Emek, Panchenko, Anna R.

Journal:

Seibutsu Butsuri

Année:

2013

Langue:

english

Fichier:

PDF, 692 KB

english, 2013

19

3P267 Structural characteristics of phosphorylation sites on disordered binding regions(20. Origin of life & Evolution,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Nishi, Hafumi, Kidera, Akinori

Journal:

Seibutsu Butsuri

Année:

2014

Langue:

english

Fichier:

PDF, 1.00 MB

english, 2014

20

Structural characterization of single nucleotide variants at ligand binding sites and enzyme active sites of human proteins

Yamada, Kazunori D., Nishi, Hafumi, Nakata, Junichi, Kinoshita, Kengo

Journal:

Biophysics and Physicobiology

Année:

2016

Langue:

english

Fichier:

PDF, 658 KB

english, 2016

21

1P038 Full-scale conformational sampling of K63 and linear polyubiquitins(01B. Protein : Structure & Function,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Shimizu, Masanori, Nishi, Hafumi, Moritsugu, Kei, Kidera, Akinori

Journal:

Seibutsu Butsuri

Année:

2014

Langue:

english

Fichier:

PDF, 694 KB

english, 2014

22

Structural and Functional Characteristics of Protein Phosphorylation Revealed by Bioinformatic Approaches

Journal:

Seibutsu Butsuri

Année:

2016

Fichier:

PDF, 470 KB

2016

23

Dynamic recognition and linkage specificity in K63 di-ubiquitin and TAB2 NZF domain complex

Moritsugu, Kei, Nishi, Hafumi, Inariyama, Keiichi, Kobayashi, Masanori, Kidera, Akinori

Journal:

Scientific Reports

Année:

2018

Langue:

english

Fichier:

PDF, 7.88 MB

english, 2018